| Protein ZmCADR16 | |
|---|---|
|
ZmCADR16 is a protein in the CCAAT-DR1 family.
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| Information | |
| TF Name: | ZmCADR16 |
| Species: | Maize |
| TF Family: | CCAAT-DR1 |
| Gene Name(Synonym): | CADTFR16 |
| Uniprot ID: | A0A1D6PDQ1 |
Protein ZmCADR16
ZmCADR16 is a protein in the CCAAT-DR1 family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | |||||
|---|---|---|---|---|---|
| CCAAT-Dr1 | NF-YB | NF-YC | PF00125 | PF00808 | |
| Zm00001eb308280_T001 |  | | | | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d019865 | DAPseq |  |
sequence | fimo | position |
| Zm00001d019865 | DAPseq |  |
sequence | fimo | position |
| Zm00001d019865 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d019865 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmCADR16 is the regulator
Interactions where ZmCADR16 is the target
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Zm00001eb308280_T001 from maize genome v5
Amino Acid Sequence
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MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| CCAAT-Dr1 |
|
| PF00808 |
|
| PF00125 |
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| NF-YB |
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| NF-YC |
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| PF00125 |
|
| PF00808 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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CTCACAATAATTAGATTATCTCCAC...
CTCACAATAATTAGATTATCTCCACAGTCATATTCTCTCTGCAGCTAAGTTCTCGGAAAAGGCGGTAAAAAAGTTGACCAAAAGGACACACTGGATGCACATTGACAGCTTACTCTCCCGTCGCAGCCTGAAGCTGTGCGCCCCGGTTCGGTGGGCGTGAAAGGGGAGAAAAGAGGGCGGGAAGGACCGCGGATTTTGCTAGGGTTTGCGGTTTCTGCTTCACACTGCCTCCTCAGTCCTCACCACCACAGCCGTCGCGCGCAGGAGGTTTGGGAGGATGCCACGTAAGATCACCTTGGTCAAGGAGGGGGAGCCGCAGCCGGTGGACGCTGCTCAAGGGGAGCCCGCTCCGGCACCGGCGGCACCGACGGCCGCGTTGACGGAGGCGGAGGTGGACGAGCTGCCCAGGGCCATCGTGCGCCGCCTTGTCAAGGACAAGCTTTCCCACGTCGCCGGTGGGGAAGGAGCCGAGGTCATCGTCAACAAGGACGCCATGGCCGCGTTCGCCGAGAGCGCCCGCATCTTCATCCACTATCTCTCCGCCACTGCCAATGATATGTGCAAGGAATCAAAGAGGCAGACCATCAACGCTGATGATGTCCTCAATGCTCTTGATGACATGGAGTTTTCGGAGTTTGTAGAGCCCCTTAGGACTTCACTGCAAGAGTTTAGAAACAAAAATGCAGACAAAAGGTCAGAAGCAAAGAAACAACAGAAGGAAAAGAGAAGGAAATTAAATGAAGAGACACTTCCGCAGAAAGAAAATGATCCAGCTGATGATGCCAAGGAGAATGGAGTAGCTTAATCGCAAGAAAAATGAAGAATGAATACAATTAACTTCTCTGCTGGAGGGGCAGTAACACGCAGAATCAAAACCATGGCAGTATTTGTTGGTAGTTGTATTTGCTTTTGCTCCATGTAGCCTCTACTCCAAAACACTTTCTTGACTTGATATGATGCTGTATAATTCTAGTGTCCTATCAGTTTTCAGCTTGCTTATGGTGCAATTAAAATTCTATGTGCCTGATGAAATTGTTCTTATGAATGAAGAATGATACCAGCACTATGTTCGTTGGC
GRMZM2G012654_T01 from maize genome v3
Amino Acid Sequence
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MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
Nucleotide Sequence
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CTCACAATAATTAGATTATCTCCAC...
CTCACAATAATTAGATTATCTCCACAGTCATATTCTCTCTGCAGCTAAGTTCTCGGAAAAGGCGGTAAAAAAGTTGACCAAAAGGACACACTGGATGCACATTGACAGCTTACTCTCCCGTCGCAGCCTGAAGCTGTGCGCCCCGGTTCGGTGGGCGTGAAAGGGGAGAAAAGAGGGCGGGAAGGACCGCGGATTTTGCTAGGGTTTGCGGTTTCTGCTTCACACTGCCTCCTCAGTCCTCACCACCACAGCCGTCGCGCGCAGGAGGTTTGGGAGGATGCCACGTAAGATCACCTTGGTCAAGGAGGGGGAGCCGCAGCCGGTGGACGCTGCTCAAGGGGAGCCCGCTCCGGCACCGGCGGCACCGACGGCCGCGTTGACGGAGGCGGAGGTGGACGAGCTGCCCAGGGCCATCGTGCGCCGCCTTGTCAAGGACAAGCTTTCCCACGTCGCCGGTGGGGAAGGAGCCGAGGTCATCGTCAACAAGGACGCCATGGCCGCGTTCGCCGAGAGCGCCCGCATCTTCATCCACTATCTCTCCGCCACTGCCAATGATATGTGCAAGGAATCAAAGAGGCAGACCATCAACGCTGATGATGTCCTCAATGCTCTTGATGACATGGAGTTTTCGGAGTTTGTAGAGCCCCTTAGGACTTCACTGCAAGAGTTTAGAAACAAAAATGCAGACAAAAGGTCAGAAGCAAAGAAACAACAGAAGGAAAAGAGAAGGAAATTAAATGAAGAGACACTTCCGCAGAAAGAAAATGATCCAGCTGATGATGCCAAGGAGAATGGAGTAGCTTAATCGCAAGAAAAATGAAGAATGAATACAATTAACTTCTCTGCTGGAGGGGCAGTAACACGCAGAATCAAAACCATGGCAGTATTTGTTGGTAGTTGTATTTGCTTTTGCTCCATGTAGCCTCTACTCCAAAACACTTTCTTGACTTGATATGATGCTGTATAATTCTAGTGTCCTATCAGTTTTCAGCTTGCTTATGGTGCAATTAAAATTCTATGTGCCTGATGAAATTGTTCTTATGAATGAAGAATGATACCAGCACTATGTTCGTTGGCAAATTACTGGTTTTATTCTTCCAGTACTAGAATAGCTCACGACTTCCTTAGATGTTGAAA
GRMZM2G012654_T02 from maize genome v3
Amino Acid Sequence
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MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATSVTSHSLHSPTISD
Nucleotide Sequence
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GACCAAAAGGACACACTGGATGCAC...
GACCAAAAGGACACACTGGATGCACATTGACAGCTTACTCTCCCGTCGCAGCCTGAAGCTGTGCGCCCCGGTTCGGTGGGCGTGAAAGGGGAGAAAAGAGGGCGGGAAGGACCGCGGATTTTGCTAGGGTTTGCGGTTTCTGCTTCACACTGCCTCCTCAGTCCTCACCACCACAGCCGTCGCGCGCAGGAGGTTTGGGAGGATGCCACGTAAGATCACCTTGGTCAAGGAGGGGGAGCCGCAGCCGGTGGACGCTGCTCAAGGGGAGCCCGCTCCGGCACCGGCGGCACCGACGGCCGCGTTGACGGAGGCGGAGGTGGACGAGCTGCCCAGGGCCATCGTGCGCCGCCTTGTCAAGGACAAGCTTTCCCACGTCGCCGGTGGGGAAGGAGCCGAGGTCATCGTCAACAAGGACGCCATGGCCGCGTTCGCCGAGAGCGCCCGCATCTTCATCCACTATCTCTCCGCCACGTCTGTAACATCACATTCCCTCCACAGTCCCACCATCTCTGATTAGATCCAGATTACCCCCAGTTACTGTGATTCTTATCCTCTGTTGCTCTGTATGGGGGTTGGAATTTGGAACTCGGAAGAGAAAGCAACTAATCTGATATTTTTGTTGAACAGTAGACTCAGTAATAGTGAGGTACAGCAATTTTATCCAATCAAATTCTGCGTATTTTGGGGTATAATGCTGCCATCAATGGAGTGGATCCAAGTAATATATGTGATGTATTTTAATGTTGTTGAGTAACTAGCAGGATATTTTTGTTCCATAGCAATCTCTGCTCGTTTTTTAGTAGAAAAAGGTACATAGAAGGGAATGGACATAATCTATCCTCTCTTTTTTTTAAGAAAGGGTTCTTGCATATTGTAGCCTGGAGGCTCCCGATTTTTCCAGATGGAAAACAGACTTCGAGTGTCGGTATAATCTGCTTTTCGTTATCAATGCATCCATGAAAATAATACGATCATGGTTTTATCTGCAGTGCCAATGATATGTGCAAGGAATCAAAGAGGCAGACCATCAACGCTGATGATGTCCTCAATGCTCTTGATGACATGGAGTTTTCGGAGTTTGTAGAGCCCCTTAGGACTTCACTGCAAGAGTTTAGAAACAAAAATGCAGACAAAAGGTCAGAAGCAAAGAAACAACAGAAGGAAAAGAGAAGGAAATTAAATGAAGAGACACTTCCGCAGAAAGAAAATGATCCAGCTGATGATGCCAAGGAGAATGGAGTAGCTTAATCGCAAGAAAAATGAAGAATGAATACAATTAACTTCTCTGCTGGAGGGGCAGTAACACGCAGAATCAAAACCATGGCAGTATTTGTTGGTAGTTGTATTTGCTTTTGCTCCATGTAGCCTCTACTCCAAAACACTTTCTTGACTTGATATGATGCTGTATAATTCTAGTGTCCTATCAGTTTTCAGCTTGCTTATGGTGCAATTAAAATTCTATGTGCCTGATGAAATTGTTCTTATGAATGAAGAATGATACCAGCACTATGTTCGTTGGCAAATTACTGGTTTTATTCTTCCAGTACTAGAATAGCTCACGACTTCCTTAGATGTTGAAA
Zm00001d019865_T001 from maize genome v4
Amino Acid Sequence
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MPRKITLVKEGEPQPVDAAQGEPAPAPAAPTAALTEAEVDELPRAIVRRLVKDKLSHVAGGEGAEVIVNKDAMAAFAESA
RIFIHYLSATANDMCKESKRQTINADDVLNALDDMEFSEFVEPLRTSLQEFRNKNADKRSEAKKQQKEKRRKLNEETLPQ
KENDPADDAKENGVA
Nucleotide Sequence
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GACCAAAAGGACACACTGGATGCAC...
GACCAAAAGGACACACTGGATGCACATTGACAGCTTACTCTCCCGTCGCAGCCTGAAGCTGTGCGCCCCGGTTCGGTGGGCGTGAAAGGGGAGAAAAGAGGGCGGGAAGGACCGCGGATTTTGCTAGGGTTTGCGGTTTCTGCTTCACACTGCCTCCTCAGTCCTCACCACCACAGCCGTCGCGCGCAGGAGGTTTGGGAGGATGCCACGTAAGATCACCTTGGTCAAGGAGGGGGAGCCGCAGCCGGTGGACGCTGCTCAAGGGGAGCCCGCTCCGGCACCGGCGGCACCGACGGCCGCGTTGACGGAGGCGGAGGTGGACGAGCTGCCCAGGGCCATCGTGCGCCGCCTTGTCAAGGACAAGCTTTCCCACGTCGCCGGTGGGGAAGGAGCCGAGGTCATCGTCAACAAGGACGCCATGGCCGCGTTCGCCGAGAGCGCCCGCATCTTCATCCACTATCTCTCCGCCACTGCCAATGATATGTGCAAGGAATCAAAGAGGCAGACCATCAACGCTGATGATGTCCTCAATGCTCTTGATGACATGGAGTTTTCGGAGTTTGTAGAGCCCCTTAGGACTTCACTGCAAGAGTTTAGAAACAAAAATGCAGACAAAAGGTCAGAAGCAAAGAAACAACAGAAGGAAAAGAGAAGGAAATTAAATGAAGAGACACTTCCGCAGAAAGAAAATGATCCAGCTGATGATGCCAAGGAGAATGGAGTAGCTTAATCGCAAGAAAAATGAAGAATGAATACAATTAACTTCTCTGCTGGAGGGGCAGTAACACGCAGAATCAAAACCATGGCAGTATTTGTTGGTAGTTGTATTTGCTTTTGCTCCATGTAGCCTCTACTCCAAAACACTTTCTTGACTTGATATGATGCTGTATAATTCTAGTGTCCTATCAGTTTTCAGCTTGCTTATGGTGCAATTAAAATTCTATGTGCCTGATGAAATTGTTCTTATGAATGAAGAATGATACCAGCACTATGTTCGTTGGC
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